PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS546270.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 278aa    MW: 30213 Da    PI: 9.4432
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS546270.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS103.92.3e-321592781123
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL+ cA+ v+ +d + a+ +L+++++++sp+gd mqR+a+yf+++L+arla+s++++y  + +++ts    +++l+a++l+  ++P +k+ ++ 
  EcS546270.10 159 LRTLLTLCAQSVAVDDRRSANDMLKQIRQHSSPTGDGMQRMAHYFANGLEARLAGSGTQIYTGIMSKPTS---AASVLKAHRLLLAACPSPKIVNFF 252
                   5789************************************************************999999...8999******************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGl 123
                    N++I + +e+++r+HiiDf+i +G+
  EcS546270.10 253 SNKTITNVAENATRLHIIDFGILYGF 278
                   **********************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.16133278IPR005202Transcription factor GRAS
PfamPF035148.1E-30159278IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
SPITDGFADS PVSILRLPEL LSEKVKGVEE ASKFLPNNSS PSANLEKNSL SSTIPENDAI  60
STVPEVEKTM GSGRSNKSRG KKNSHSENVC LEESRSHKHS SLSTESDVSS DMFDAVLLSK  120
DDPLREELQR AQQNGQTKGS NGKKGRVKKQ GREKDIVDLR TLLTLCAQSV AVDDRRSAND  180
MLKQIRQHSS PTGDGMQRMA HYFANGLEAR LAGSGTQIYT GIMSKPTSAA SVLKAHRLLL  240
AACPSPKIVN FFSNKTITNV AENATRLHII DFGILYGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-131422781140Protein SCARECROW
5b3h_D3e-131422781140Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067415.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_010067417.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_010067418.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_018715158.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_018715159.10.0PREDICTED: scarecrow-like protein 9 isoform X2
TrEMBLA0A059BHN80.0A0A059BHN8_EUCGR; Uncharacterized protein
STRINGXP_010067414.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-57GRAS family protein