PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS543292.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 137aa MW: 15285 Da PI: 6.3419 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 82.6 | 5.9e-26 | 1 | 71 | 29 | 99 |
DUF260 29 kfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 kfanvhk+FGasnv+kll+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ EcS543292.10 1 KFANVHKIFGASNVSKLLNEVLPHQREDTVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDATNA 71 69****************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 7.4E-25 | 1 | 70 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 16.908 | 1 | 73 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
KFANVHKIFG ASNVSKLLNE VLPHQREDTV NSLAYEAEAR LKDPVYGCVG AISVLQRQVI 60 RLQKELDATN ADLIQYTCRE MPSTVSRPVH YRRKNNNNMV QVYGDGGFDQ NCGGYYHPNA 120 WSNVHDGDGQ EGDDGGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 1 | 81 | 39 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 1 | 81 | 39 | 119 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033314.1 | 1e-100 | PREDICTED: LOB domain-containing protein 25 isoform X1 | ||||
Swissprot | Q8L8Q3 | 6e-42 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A059AGJ2 | 2e-98 | A0A059AGJ2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033314.1 | 2e-99 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-44 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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