PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS541377.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 367aa    MW: 40023.3 Da    PI: 8.4244
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS541377.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.88.6e-40273677
                  T-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
           SBP  6 gCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                  gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  EcS541377.20  2 GCNKDLSSSKDYHKRHKVCEAHSKTSKVIVNGKEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 73
                  7*********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114130.564172IPR004333Transcription factor, SBP-box
PfamPF031104.0E-30271IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.6E-30259IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-36275IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
YGCNKDLSSS KDYHKRHKVC EAHSKTSKVI VNGKEQRFCQ QCSRFHLLAE FDDGKRSCRK  60
RLAGHNERRR KPQNGIHPAK AGKLLPPYCG NRFQGNVFTT ASFICQDILP SGGHLHPEKF  120
KANDWGNRVK AEHGTDYGTL SAVHPRSPFP SYGFGKQLSP FLDNRGNSAS VGIFGEASRF  180
QHEGQNSGSR SLFPDPLGSE DYGIFDTEST VQGLPGVSES RRALSLLSSH SQNSSSQTSG  240
IPMDQSLIMH GGQSRYGMGP VSENLVGLSS LALENGGSSK FPSSGIHSAE ANQGPILICD  300
NENSNYAISG GFGSGLLDAK DHFHCGDNEP TINLLQLSSQ LQRVEHQRQS SMHVKQENNA  360
FSCLQTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-273711684squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031056.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A059D0K30.0A0A059D0K3_EUCGR; Uncharacterized protein
STRINGXP_010031056.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14770918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.19e-44SBP family protein