PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS540317.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 403aa    MW: 44326.1 Da    PI: 6.934
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS540317.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.62.3e-30611913121
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....sec..eaesssssasnsssg.... 88 
                   g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl ++k+ i+ l+ ++ +++     +     +++sss++s++s      
  EcS540317.10  61 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLDASKQDIDRLPPLQLPPNfgqfhQ-QilFPHESSSANSQPSLIspfl 156
                   79*************************************************************88888554431.1453333333333333325788 PP

           TCP  89 ..kaaksaakskksqksaasalnlakesrakarar 121
                     ++ ++ +++ k ++++  ++  + es+a ar++
  EcS540317.10 157 ptSSTTFLKHGIKITENSVDQRVNDSESSAMARSK 191
                   76444444455555555555555555777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.4462120IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2862193IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNPIPRGGGG GGGGGGFQSA KQEEEKNETS RSLSRLAPPS TSRHWSGFRN PRIVRVSRSF  60
GGKDRHSKVC TIRGLRDRRI RLSVPTAIQL YDLQDKLGLS QPSKVIDWLL DASKQDIDRL  120
PPLQLPPNFG QFHQQILFPH ESSSANSQPS LISPFLPTSS TTFLKHGIKI TENSVDQRVN  180
DSESSAMARS KFWNIDTYNT LRTKDKEVET DDHNGQPLSE KGKWIENDAV HGHLGSSVNS  240
HHGQVSAQNF FPIVSYSLSG STLPYSYNNQ WEPSNLSLSQ LGTHGFQLLP DQNPLNSVSV  300
ASSSALPSAT PQLYFCPSAA MTPIFPSYPS YLTPTVETDA RQLNHLHLLS SSSQQHILPT  360
SLLPSLQLIS SPMGLPFQTS TSAKFLHRQD DDESEEDEDG NGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1767121155Putative transcription factor PCF6
5zkt_B2e-1767121155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045604.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A059CZF40.0A0A059CZF4_EUCGR; Uncharacterized protein
STRINGXP_010045604.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5