PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS537772.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 23907.1 Da PI: 4.7558 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.4e-08 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia +++ gRt++++k++w+++l EcS537772.10 1 WSLIAGRIP-GRTDNEIKNYWNTHL 24 *********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.91E-6 | 1 | 24 | No hit | No description |
SuperFamily | SSF46689 | 5.06E-7 | 1 | 33 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.596 | 1 | 28 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.4E-6 | 1 | 24 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-11 | 1 | 39 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
WSLIAGRIPG RTDNEIKNYW NTHLSKKLIS QGIDPRTHKP LNPETQNSSS NPPAKAPPSK 60 AAPRPRSPNP SPISSGLEET SSGSPAILKE NDQIQSADNM EAVNQNGTAT AHGGEASYLP 120 GTQHYHVMGL RSSHGLSNEE EEDLNCCGDD VFSSFLNSLI NEEAFPIQHQ LQQQAVGSSP 180 DSDSLIPMAA APAFGIAAGW DSAIMSSVIN QDNNSRRANE QVE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044942.1 | 1e-159 | PREDICTED: transcription repressor MYB5 | ||||
TrEMBL | A0A059D9A8 | 1e-157 | A0A059D9A8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044942.1 | 1e-158 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-24 | myb domain protein 5 |