PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS521129.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 26779.4 Da PI: 10.3546 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 182 | 204 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C++Cg+ F+ + + H + H EcS521129.10 182 ICHKCGEQFKKLDAVEAHHLSkH 204 6*****************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 183 | 204 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MPAVWFALKR SLDCKSSRQS DVHEPKSRGL NNIVVRRPRC GCSKSMSHLR DVVHGSKRQA 60 AQKPPSCSPR SIASSEFINP ITHEVVFNNS KCEIKIMGVG GKVGGNHSRS DSTFVGTLHP 120 GTPGPRGQYT VPSSYSCPRS TSTPPRKIGG SSATSGGSRS SGFPKSRTMV GPDAHSGSSV 180 LICHKCGEQF KKLDAVEAHH LSKHAVTELT DGDSSKRIVE IICQTSWLKS EHSSCGHIER 240 VLKVHNMQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052462.1 | 1e-177 | PREDICTED: uncharacterized protein LOC104441152 | ||||
TrEMBL | A0A059CDF3 | 1e-175 | A0A059CDF3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052462.1 | 1e-176 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3553 | 8 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 3e-58 | C2H2 family protein |