PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS519746.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 112aa MW: 13452.4 Da PI: 9.7919 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.7 | 6.1e-20 | 5 | 94 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ff v +++++ ++ l++p +f+++h +k++ +l+ s rsW+vkl+ +++++ +l++GW++Fv++ gL + D++vF+l++r++ ++v EcS519746.10 5 FFRVVMRPSYIQKY-LCVPCEFFRKHVQKNK---QLVTLRYSDRSWQVKLRSYGHRRMAFLSTGWSSFVRETGLHVSDVCVFELIDRNDIMFRV 94 66677777777775.9**********54433...355555699********9*********************************987774554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.49E-22 | 1 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-25 | 2 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.67E-16 | 4 | 98 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 4 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-17 | 5 | 94 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-14 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
SDHPFFRVVM RPSYIQKYLC VPCEFFRKHV QKNKQLVTLR YSDRSWQVKL RSYGHRRMAF 60 LSTGWSSFVR ETGLHVSDVC VFELIDRNDI MFRVSNFNND GKDLIYIDRD GH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065668.1 | 2e-66 | PREDICTED: B3 domain-containing protein REM13 isoform X2 | ||||
TrEMBL | A0A059BBI7 | 9e-64 | A0A059BBI7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065667.1 | 2e-64 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14804 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-14 | B3 family protein |