PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS512834.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LFY | ||||||||
Protein Properties | Length: 229aa MW: 26085.2 Da PI: 5.7221 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 261.4 | 3.7e-80 | 12 | 210 | 46 | 259 |
FLO_LFY 46 rklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetald 142 r++ +leelf+ayG+rylt+++iae+Gft++tL+dmk+eeldd+m+sls+ifr+dllvGeryGikaa+raerrrl e++ +++r++l s+d ++ ld EcS512834.10 12 RTMGGLEELFEAYGIRYLTASRIAEMGFTANTLLDMKEEELDDMMNSLSHIFRWDLLVGERYGIKAAIRAERRRLLEAD-DHRRHHLHSTD-HALLD 106 55789************************************************************************88.55555555566.568** PP FLO_LFY 143 alsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepg 239 als++glsee+v ++ e+ + g++g+g+++ + + ++++kk+ ++r++ + +k + +ee+dede + +++ rqrehPfivtepg EcS512834.10 107 ALSHQGLSEEQVMQHSEKDQLGRAGSGDTAGTSWGA---QQQRKKH----RHRHRITAMKGA----ATEEDDEDE--EEVEEMRRQREHPFIVTEPG 190 ************997777776666644444443331...1222222....222222222211....122222222..3334578************* PP FLO_LFY 240 evargkknGLDYLfdLyeqC 259 evargkknGLDYLf+Lyeq EcS512834.10 191 EVARGKKNGLDYLFHLYEQV 210 ******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.3E-77 | 8 | 210 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDPEAFAVVG LRTMGGLEEL FEAYGIRYLT ASRIAEMGFT ANTLLDMKEE ELDDMMNSLS 60 HIFRWDLLVG ERYGIKAAIR AERRRLLEAD DHRRHHLHST DHALLDALSH QGLSEEQVMQ 120 HSEKDQLGRA GSGDTAGTSW GAQQQRKKHR HRHRITAMKG AATEEDDEDE EEVEEMRRQR 180 EHPFIVTEPG EVARGKKNGL DYLFHLYEQV PRLPPPSPIP GQGAGREMP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ude_A | 2e-27 | 14 | 86 | 8 | 80 | GINLFY PROTEIN |
4ude_B | 2e-27 | 14 | 86 | 8 | 80 | GINLFY PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018720665.1 | 1e-135 | PREDICTED: leafy/floricaula homolog FL1 | ||||
Swissprot | O64953 | 1e-135 | FL1_EUCGL; Leafy/floricaula homolog FL1 | ||||
TrEMBL | A0A059A335 | 1e-134 | A0A059A335_EUCGR; Uncharacterized protein | ||||
STRING | XP_010039002.1 | 1e-135 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7907 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 4e-46 | floral meristem identity control protein LEAFY (LFY) |