PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS510653.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 518aa    MW: 56358.7 Da    PI: 5.8619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS510653.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.72.9e-911885162331
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++ L+e+A+a+ +g    a+++L+rls   +p+g++  +l  y++ AL++r++        a +p + +e  +++++++++ ++e+sP++k+++++a
  EcS510653.10 188 RQSLMEAATAIYEGRVDVASEILTRLSAVPNPKGNSEPKLMEYMLSALKSRVSP-------ADNPPPVAELFTKDHVSSTQSLYELSPCFKLGFMAA 277
                   689**************************************************9.......33444444445999********************** PP

          GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl....vakrle 187
                   N +Ilea++++   +++H+iDfd++q +Q+++Ll+aL++R+ + + +l+iT++++   + +e+l+ +++rL+++A+++gv++ fn++    v+++++
  EcS510653.10 278 NLMILEAASEQpstNKLHVIDFDVGQEGQYINLLHALSTRQpGIQSTLKITTLAD-GFNGEERLRMVRDRLSELAAQMGVRLVFNIVsiniVSQKVS 373
                   *********9999999************************956677*********.44499*************************99998888*** PP

          GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                   +l+ ++L ++p+E+laVnl+++l+r++desvs+e++rde+L+ vk+l P+vv++veqe++ n+++F++r  eal yy al++sle+++pr+s er+ 
  EcS510653.10 374 ELSRDSLGCEPDEVLAVNLAFKLYRMPDESVSVENPRDELLRRVKGLAPRVVTLVEQEMNGNTAPFATRAGEALGYYGALLESLESTVPRDSPERAR 470
                   ************************************************************************************************* PP

          GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                    E+  l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  pl++
  EcS510653.10 471 AEEG-LSRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLGQ 516
                   ****.************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.261161518IPR005202Transcription factor GRAS
PfamPF035141.0E-88188516IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
QHQHQQNQAL SNLILRSVRS KISPRSSPIS HLDFSAAVSS PDVMSSLSAL SSPAGFSAQR  60
YGLPILQQLR PQPIHLGNGA IHVSNQALGG VSFANVLQNR ANPHQAEPEN KMMNRLQELE  120
KQLLDDDEEG DGDAVSVITN ANSEWSETIQ SLISPGQKQI SPSPTSSSSS SSPSSSLSVP  180
SPVPICSRQS LMEAATAIYE GRVDVASEIL TRLSAVPNPK GNSEPKLMEY MLSALKSRVS  240
PADNPPPVAE LFTKDHVSST QSLYELSPCF KLGFMAANLM ILEAASEQPS TNKLHVIDFD  300
VGQEGQYINL LHALSTRQPG IQSTLKITTL ADGFNGEERL RMVRDRLSEL AAQMGVRLVF  360
NIVSINIVSQ KVSELSRDSL GCEPDEVLAV NLAFKLYRMP DESVSVENPR DELLRRVKGL  420
APRVVTLVEQ EMNGNTAPFA TRAGEALGYY GALLESLEST VPRDSPERAR AEEGLSRKLG  480
NSVACEGRDR VERCEVFGKW RARMGMAGFE LKPLGQHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3720551721331GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060571.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-147SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DIP40.0A0A059DIP4_EUCGR; Uncharacterized protein
STRINGXP_010060571.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-142SCARECROW-like 8