PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS504776.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 105aa MW: 12358 Da PI: 9.6324 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.7 | 7.2e-30 | 9 | 103 | 1 | 94 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+G rF+Pt+eelv++yLk k+ g+k + ++i+evd++++ PwdLpk +++++ + w+fF++ ++ky+++kr++r+ ++g Wk tg+++++ + EcS504776.10 9 LPVGWRFRPTEEELVNHYLKLKILGDKKVE-KIIPEVDVHQLPPWDLPKlsSINSDGDGWFFFCRLQNKYPQSKRTRRTNDHGSWKPTGENRKIRT 103 799**********************99555.89***************5457788889***********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-30 | 6 | 103 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.497 | 9 | 105 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-14 | 10 | 100 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
STDISLVDLP VGWRFRPTEE ELVNHYLKLK ILGDKKVEKI IPEVDVHQLP PWDLPKLSSI 60 NSDGDGWFFF CRLQNKYPQS KRTRRTNDHG SWKPTGENRK IRTQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-18 | 7 | 101 | 13 | 105 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018718756.1 | 4e-68 | PREDICTED: protein NTM1-like 9 isoform X4 | ||||
Swissprot | F4JN35 | 1e-30 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A059DC64 | 2e-53 | A0A059DC64_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029942.1 | 3e-66 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 5e-33 | NAC transcription factor-like 9 |
Publications ? help Back to Top | |||
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