PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS504449.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 280aa MW: 32327 Da PI: 8.5639

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS504449.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	245.9	1.6e-75	16	280	6	269
GRAS 6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 + cA+a+s +d++ a++lL++++e++sp gd+ qRla+yf+++L+arl++ ++ y+++ ++ ++ ++ l++++l ++P+ +fs + aN EcS504449.10 16 ILCAQAISISDFRTANELLKQIRENSSPFGDASQRLAHYFANGLEARLMGnnvRGEVFYSTVVAR---RTLAADILKSYHLHISTCPFNQFSMFFAN 109 56********************************************99322233344444444...4459********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 +Il+ +e+++++HiiDf+i G+QWp+L+q+L+sRpegp +lRiTg++ p++g +e++eet +rL+k++e+++vpfefn+++++++e ++l +L EcS504449.10 110 YMILKFAEKATTLHIIDFGIAFGFQWPNLIQKLSSRPEGPCKLRITGIELPQAGlrPAERIEETCRRLKKYCERFDVPFEFNFIASRNWEFIKLADL 206 *************************************************9*************************9999****** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 ++++E++aVn+ + ++l d++v+ +++rd+vL l+++++P+++v++ + +++n++ F +rf eal +sa++d EcS504449.10 207 YIQSNETVAVNCLDRFKNL-DDTVEDSNPRDAVLYLIRKIKPDIFVHAIRSSSYNAAFFETRFREALFEFSAVYD 280 ********9988777.7999**********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.394	1	280	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-73	16	280	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
KKQESKNTVD LRTLPILCAQ AISISDFRTA NELLKQIREN SSPFGDASQR LAHYFANGLE 60 ARLMGNNVRG EVFYSTVVAR RTLAADILKS YHLHISTCPF NQFSMFFANY MILKFAEKAT 120 TLHIIDFGIA FGFQWPNLIQ KLSSRPEGPC KLRITGIELP QAGLRPAERI EETCRRLKKY 180 CERFDVPFEF NFIASRNWEF IKLADLYIQS NETVAVNCLD RFKNLDDTVE DSNPRDAVLY 240 LIRKIKPDIF VHAIRSSSYN AAFFETRFRE ALFEFSAVYD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-35	18	280	25	274	Protein SCARECROW
5b3h_D	3e-35	18	280	25	274	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018724295.1	0.0	PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34
Swissprot	Q9XE58	1e-108	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A059D5Q9	0.0	A0A059D5Q9_EUCGR; Uncharacterized protein
STRING	XP_010043534.1	1e-164	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-110	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]