PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC081223.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 331aa    MW: 36249.9 Da    PI: 6.1771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC081223.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19184234255
           AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GVr+++ +g+++AeIrdp   + k+ r++lg+f+t  eAa+a+++a+ kl+g
  EcC081223.10 184 HYRGVRRRP-WGKFAAEIRDP---NrKSSRVWLGTFDTGIEAARAYDQAAFKLRG 234
                   7********.**********9...6678*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-31183243IPR001471AP2/ERF domain
SMARTSM003801.7E-35184248IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22184243IPR016177DNA-binding domain
CDDcd000184.50E-30184242No hitNo description
PfamPF008471.5E-15184234IPR001471AP2/ERF domain
PROSITE profilePS5103224.5184242IPR001471AP2/ERF domain
PRINTSPR003671.9E-13185196IPR001471AP2/ERF domain
PRINTSPR003671.9E-13224244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MATSSSPRLS SRLQLIKQHL LGESSPIGAA FMADLATTAA APSSDSIAFE PAIEPSRSES  60
QSSVSFSHFD CLQPEDLLEF DVSSIAFEQN QSESFSFEAK PQKLDLIPPM AANWSSSMSS  120
ETEPFFGFEA NPVIISKTAS KTSQSSKKPS LKIAVPRKVE LLQFSKENQT VQKGSNQAHD  180
EQRHYRGVRR RPWGKFAAEI RDPNRKSSRV WLGTFDTGIE AARAYDQAAF KLRGSKAVLN  240
FPLEAGKLKP AAAPADDKKR LREEEEEASE VIVKKEKVVE SDAGKCRDGP LTPSSWTGTW  300
DCDDAMGIFN VPLLSPLSPI PALGFPQLMV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-26183243161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055448.10.0PREDICTED: ethylene-responsive transcription factor ERF105
SwissprotO803411e-59EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A059C1500.0A0A059C150_EUCGR; Uncharacterized protein
STRINGXP_010055448.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]