PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC081179.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 432aa MW: 48486.6 Da PI: 7.3154

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC081179.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.9	9.7e-50	30	155	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++++ EcC081179.10 30 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRGENSR 125 79*************************.89***********8778899*************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +t+W+m+eyrl EcC081179.10 126 SIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 155 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.606	29	176	IPR003441	NAC domain
SuperFamily	SSF101941	9.42E-56	29	176	IPR003441	NAC domain
Pfam	PF02365	7.0E-25	31	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MAIAAIMSHE DASDTNNNTA KDDHEHDMVM PGFRFHPTEE ELVEFYLRRK VEGKRFNVEL 60 ITFLDLYRYD PWELPALAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW KATGADRMIR 120 GENSRSIGLK KTLVFYSGKA PKGIRTSWIM NEYRLPQHET ERYQKAEISL CRVYKRSGVE 180 DHPSLPRTLP TRASSSSSSR STGIISSSDQ NKNHHNMSIS GQSLQLHANA FDRFQAFMGG 240 AGGGQLSSHS AQNNDQADGS SSSDVTTTLG LSKQNVSNAY YPIPPISATA QLALMEEEGM 300 ANFHHQLHSS KQAATPSSVS LVFPHLFPSS SSTNPADDLH RLVNYPQATA ASFNQQQQHP 360 QLQQYYPSQY SQFQGLLLPQ SSSSSSLSQN LTLNKLPSPL QTPFSDRLWE WNPVPDANRE 420 YSDNNNPPFS SA

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MAIAAIMSHE DASDTNNNTA KDDHEHDMVM PGFRFHPTEE ELVEFYLRRK VEGKRFNVEL  60
ITFLDLYRYD PWELPALAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW KATGADRMIR  120
GENSRSIGLK KTLVFYSGKA PKGIRTSWIM NEYRLPQHET ERYQKAEISL CRVYKRSGVE  180
DHPSLPRTLP TRASSSSSSR STGIISSSDQ NKNHHNMSIS GQSLQLHANA FDRFQAFMGG  240
AGGGQLSSHS AQNNDQADGS SSSDVTTTLG LSKQNVSNAY YPIPPISATA QLALMEEEGM  300
ANFHHQLHSS KQAATPSSVS LVFPHLFPSS SSTNPADDLH RLVNYPQATA ASFNQQQQHP  360
QLQQYYPSQY SQFQGLLLPQ SSSSSSLSQN LTLNKLPSPL QTPFSDRLWE WNPVPDANRE  420
YSDNNNPPFS SA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	31	176	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	31	176	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	31	176	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	31	176	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	31	176	22	168	NAC domain-containing protein 19
3swm_B	2e-54	31	176	22	168	NAC domain-containing protein 19
3swm_C	2e-54	31	176	22	168	NAC domain-containing protein 19
3swm_D	2e-54	31	176	22	168	NAC domain-containing protein 19
3swp_A	2e-54	31	176	22	168	NAC domain-containing protein 19
3swp_B	2e-54	31	176	22	168	NAC domain-containing protein 19
3swp_C	2e-54	31	176	22	168	NAC domain-containing protein 19
3swp_D	2e-54	31	176	22	168	NAC domain-containing protein 19
4dul_A	2e-54	31	176	19	165	NAC domain-containing protein 19
4dul_B	2e-54	31	176	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010065211.1	0.0	PREDICTED: NAC domain-containing protein 35
Swissprot	Q9ZVP8	1e-116	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A059B9J9	0.0	A0A059B9J9_EUCGR; Uncharacterized protein
STRING	XP_010065211.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5436	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-114	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]