PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC080461.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 163aa MW: 19137 Da PI: 9.2026

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC080461.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.2	1.1e-34	5	133	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++GfrF Pt+eel++ yL+ kv g + vi+e+ d y ++PwdLp ++ ++ +wyfF+++ +++++r +r+t+sg Wk t ++ e EcC080461.10 5 QVGFRFLPTEEELLNGYLTSKVLGYADGC--VIPELdDFYAWDPWDLPGlyqqisNIPSDGLDWYFFCPSPYLAQNSERVKRQTRSGKWKITSQKDE 99 68*********************9777..8999989******53554444444666******************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++l+g+k++Lvfykgra kt Wvmhey+l EcC080461.10 100 IKARdTKALIGTKRILVFYKGRA----KTGWVMHEYHL 133 9966777********9887....678*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.567	4	154	IPR003441	NAC domain
SuperFamily	SSF101941	8.89E-37	4	140	IPR003441	NAC domain
Pfam	PF02365	2.0E-23	6	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MERFQVGFRF LPTEEELLNG YLTSKVLGYA DGCVIPELDD FYAWDPWDLP GLYQQISNIP 60 SDGLDWYFFC PSPYLAQNSE RVKRQTRSGK WKITSQKDEI KARDTKALIG TKRILVFYKG 120 RAKTGWVMHE YHLNPKLLNG YSSTFQVPHL IYLRFLVYFS FAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-19	7	140	20	150	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-19	7	140	20	150	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-19	7	140	20	150	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-19	7	140	20	150	NO APICAL MERISTEM PROTEIN
3swm_A	5e-19	7	140	23	153	NAC domain-containing protein 19
3swm_B	5e-19	7	140	23	153	NAC domain-containing protein 19
3swm_C	5e-19	7	140	23	153	NAC domain-containing protein 19
3swm_D	5e-19	7	140	23	153	NAC domain-containing protein 19
3swp_A	5e-19	7	140	23	153	NAC domain-containing protein 19
3swp_B	5e-19	7	140	23	153	NAC domain-containing protein 19
3swp_C	5e-19	7	140	23	153	NAC domain-containing protein 19
3swp_D	5e-19	7	140	23	153	NAC domain-containing protein 19
4dul_A	5e-19	7	140	20	150	NAC domain-containing protein 19
4dul_B	5e-19	7	140	20	150	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026029.1	4e-62	PREDICTED: protein NTM1-like 9
TrEMBL	A0A059BCS2	1e-104	A0A059BCS2_EUCGR; Uncharacterized protein
STRING	XP_010041970.1	1e-105	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16613	2	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	2e-34	NAC transcription factor-like 9