PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC078055.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 155aa    MW: 16579.3 Da    PI: 8.8429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC078055.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.4e-161362255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +y GVr++k +g+Wv+eIr+p   g +  r +lg++ ++e+Aa a++ a  +l+g
  EcC078055.10 13 KYAGVRRRK-WGKWVSEIRVP---G-TqERLWLGSYTSPEGAAVAHDVASYCLRG 62
                  899***998.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.60E-221272No hitNo description
SuperFamilySSF541711.63E-161372IPR016177DNA-binding domain
PfamPF008471.7E-81362IPR001471AP2/ERF domain
SMARTSM003804.2E-251378IPR001471AP2/ERF domain
PROSITE profilePS5103220.8371372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-241372IPR001471AP2/ERF domain
PRINTSPR003674.2E-71425IPR001471AP2/ERF domain
PRINTSPR003674.2E-73652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSSSSSEEPR NAKYAGVRRR KWGKWVSEIR VPGTQERLWL GSYTSPEGAA VAHDVASYCL  60
RGPSCLDKLN FPSLLPPSAR PGVSPRSAQR AASDAGMAVD ARYIARRSNE EADRTSPGHR  120
PEVGWECAQG NEASSGTRGG RGGGDGLSIS VDDYL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064855.11e-108PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I83e-42ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A059BU801e-106A0A059BU80_EUCGR; Uncharacterized protein
STRINGXP_010064855.11e-107(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.18e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]