PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC077591.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 22867.1 Da PI: 8.6035 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 5e-39 | 42 | 143 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkC ++C++apyf ++q ++kfa+vh +FGasnv+kll ++p ++r+da+ +++yeA+ar+ dPvyG+v++il+lqqq+++l+ael+l EcC077591.10 42 PCGACKFLRRKCIHGCIFAPYFGSDQgAAKFAAVHMVFGASNVSKLLLHIPVNRRQDAVVTITYEAQARLADPVYGCVSTILALQQQVATLQAELSL 138 7***********************9989********************************************************************* PP DUF260 97 lkeel 101 ++++l EcC077591.10 139 VQTQL 143 *9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.914 | 41 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-38 | 42 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDRMQGDGMS GDRRRGRSTA RRAIPPGELP AEEMTAPPPG APCGACKFLR RKCIHGCIFA 60 PYFGSDQGAA KFAAVHMVFG ASNVSKLLLH IPVNRRQDAV VTITYEAQAR LADPVYGCVS 120 TILALQQQVA TLQAELSLVQ TQLMSSRYAV ASAFQAPEMQ QPQPAAHPCH LPMLQPEYSN 180 NSSATSNNFI NISSFAATAA AATNNFAVAA AAAASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-40 | 35 | 149 | 4 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-40 | 35 | 149 | 4 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036253.1 | 1e-115 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 4e-69 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A059A0U5 | 1e-102 | A0A059A0U5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036253.1 | 1e-114 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-52 | LOB domain-containing protein 20 |