PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC077050.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bZIP
Protein Properties Length: 189aa    MW: 21768.4 Da    PI: 8.4567
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC077050.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1383.5e-1296127233
                   XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 
                   +++k++rr+++NReAAr+sR+RKk+++++Le 
  EcC077050.10  96 RPDKVQRRLAQNREAARKSRLRKKKYVQQLES 127
                   789***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-595155IPR004827Basic-leucine zipper domain
PfamPF001704.3E-996128IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.71497139IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.4E-899134No hitNo description
SuperFamilySSF579598.13E-899131No hitNo description
PROSITE patternPS000360102117IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
FFLTANIYLS FSFPFWSGMN SPLAQLVNPR RMHTYEPFDQ FPMWGDTFKA DTVKNLEASS  60
SVIVHAVDDG LDKKFEYVSH ESAENSSSRS DQEANRPDKV QRRLAQNREA ARKSRLRKKK  120
YVQQLESSRL KLAQLELELG RAGQQGMFLG NGFDATNFGF SRTVHSGIAT FEMEYAHWVE  180
EQQRKTCEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063316.11e-119PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_010063317.11e-119PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_010063318.11e-119PREDICTED: transcription factor TGA1 isoform X1
SwissprotQ392377e-56TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A059BX681e-118A0A059BX68_EUCGR; Uncharacterized protein
STRINGXP_010063316.11e-118(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-54bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]