PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC076057.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | FAR1 | ||||||||
Protein Properties | Length: 239aa MW: 27445.5 Da PI: 9.2407 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.1 | 1.6e-24 | 9 | 94 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e++++ ++r+ +t+Cka +++k+++dg w ++++++eHnH++ EcC076057.10 9 SFYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGSKRESSST----VHPRPCMKTNCKAGMNMKRREDGIWIIYSVVKEHNHDID 94 5*****************************************99887....99**********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-21 | 9 | 94 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.5E-11 | 177 | 239 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
FQTKEAAYSF YREYARSVGF GITIKASRRS KKSGKFIDVK IACSRFGSKR ESSSTVHPRP 60 CMKTNCKAGM NMKRREDGIW IIYSVVKEHN HDIDPDDFYN SLWGRTKQVG GLAYQKKGLQ 120 AFLNEEDTQV MLEHFMSMQQ ENPNFFYAVD LGPDKCLRNV FWVDAKGRHD YGSFCDVVYF 180 DIFYVKEKYG IPFLPIVGVN HHAQYLLLGC ALIGAEGKLS YSWVMQAWLN AMGHQAPKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018727910.1 | 1e-175 | PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X2 | ||||
Swissprot | Q3EBQ3 | 1e-103 | FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A059DCQ8 | 1e-175 | A0A059DCQ8_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010044813.1 | 1e-175 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32250.3 | 1e-105 | FAR1-related sequence 2 |
Publications ? help Back to Top | |||
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