PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC075799.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 84aa    MW: 9547.78 Da    PI: 10.2306
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC075799.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-136691885
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
            B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                  lp +f++  +  ++  k + l+d+s r+W v +    + g   lt+GW +F +ang++ gD +vF+l+
  EcC075799.10  6 LPSSFFKGSS--SRDRKVVFLTDPSKRTWPVLY--HERLGVRSLTSGWDGFRQANGIQRGDDCVFQLQ 69
                  7888885554..445678999************..88888888***********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.014184IPR003340B3 DNA binding domain
CDDcd100172.17E-11684No hitNo description
Gene3DG3DSA:2.40.330.106.6E-14680IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-13669IPR015300DNA-binding pseudobarrel domain
PfamPF023628.1E-11675IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
ELPADLPSSF FKGSSSRDRK VVFLTDPSKR TWPVLYHERL GVRSLTSGWD GFRQANGIQR  60
GDDCVFQLQI LSNSQSLYKV SITR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037470.15e-53PREDICTED: B3 domain-containing protein Os01g0905400
TrEMBLA0A059A5R61e-51A0A059A5R6_EUCGR; Uncharacterized protein
STRINGXP_010037470.12e-52(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1853758