PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC074238.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 172aa MW: 20059.3 Da PI: 8.8297 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 129.4 | 4.2e-40 | 10 | 167 | 216 | 373 |
GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312 +++ ++ +rd vL+l+ s++P+++++ ++ ++n++ F++rf eal + sa++d l++++ +++ +r+++Er ++g+ei+n+vaceg er+e+ et+ EcC074238.10 10 NRGVTKCQRDMVLNLIGSMKPQIFIHGIKNGSYNAPFFVTRFREALFHLSAIYDLLDTTVVHNNVQRSVLERDVFGQEIMNIVACEGLERVEKPETY 106 344444589**************************************************************************************** PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ + rl+++GF+++pl+++ +k+ ++ l+ + + +++eee+++++lgW++r + +++W EcC074238.10 107 KQRQLRLTRVGFQQLPLDQELMKKTRAKLSGNYRKDFELEEENNWMLLGWRGRIISCCTCW 167 *********************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 20.201 | 1 | 148 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-37 | 10 | 167 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
RPCHALLLEN RGVTKCQRDM VLNLIGSMKP QIFIHGIKNG SYNAPFFVTR FREALFHLSA 60 IYDLLDTTVV HNNVQRSVLE RDVFGQEIMN IVACEGLERV EKPETYKQRQ LRLTRVGFQQ 120 LPLDQELMKK TRAKLSGNYR KDFELEEENN WMLLGWRGRI ISCCTCWLSA IV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043520.1 | 3e-96 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724289.1 | 3e-96 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724290.1 | 3e-96 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724291.1 | 3e-96 | PREDICTED: scarecrow-like protein 34 | ||||
TrEMBL | A0A059D471 | 1e-103 | A0A059D471_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043520.1 | 1e-95 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15599 | 6 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 3e-56 | SCARECROW-like 14 |