PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC073546.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 70aa    MW: 7766.71 Da    PI: 9.5713
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC073546.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY551.7e-171372359
                  EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                  sYY+Ct+agC+v+k++er+a dpk v++tYeg+Hnh+
  EcC073546.10  1 SYYKCTYAGCNVRKHIERAALDPKSVITTYEGKHNHT 37
                  8***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007746.4E-8138IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-16139IPR003657WRKY domain
SuperFamilySSF1182904.05E-13139IPR003657WRKY domain
PfamPF031066.9E-12136IPR003657WRKY domain
PROSITE profilePS5081120.771139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
SYYKCTYAGC NVRKHIERAA LDPKSVITTY EGKHNHTAPS AGKRGRTVEA TEFGDAQRSV  60
LRLKEEQVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-171403978Probable WRKY transcription factor 4
2lex_A3e-171403978Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029360.13e-41PREDICTED: probable WRKY transcription factor 4 isoform X1
SwissprotQ9ZQ701e-16WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A059AQJ42e-39A0A059AQJ4_EUCGR; Uncharacterized protein
STRINGXP_010029360.11e-40(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2767433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-19WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]