PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC072881.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 374aa    MW: 42597.8 Da    PI: 8.5666
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC072881.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.59.8e-11753732373
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL+ecA+a+s++d+e+ ++l+++  + as +g  +  l +y++e+L ar  + ++++++  +++e +   s++ l+++++++e++P+lkf++++a
  EcC072881.10   5 RHLLIECAKALSENDTEKFDKLIKKAWNAASIHGGQVWHLGSYMVEGLMARRKSLGTTVFHVPKCEEPQ---SKDWLTYMHVLYEICPYLKFGYMAA 98 
                   79****************************************************99****999999998...999********************** PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   N aI +a   ++r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s   ++   ee+++ La + +++++++ef+ l + +  d++ ++
  EcC072881.10  99 NGAIADACRDADRIHIIDFQIAQGTQWVTLLQALAARPGGAPRVRITGIDDPVSRytRRVGSEEVRRMLAVVSQQFKIHVEFRGL-SVSSPDVTRDM 194
                   ****************************************************9998899999**********************6.7789999**** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   L+++pgEalaVn+ lqlhr++desv+++++rd +L++vkslsPkv++++eqe+++n+++Fl rf+e+l+yysa+f+s+++ lpr+ ++ri   r++l
  EcC072881.10 195 LDIRPGEALAVNFPLQLHRTPDESVDTNNPRDGLLRMVKSLSPKVITLIEQESNTNTSPFLSRFIETLDYYSAMFESIDMALPRDGNDRIDPVRHCL 291
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   +r+i n++aceg+er+ rhe ++kWr+rl++a F+++pl+ ++++ + +llr+++++ ++ ee++g+++lgWk+r+L+svSaW
  EcC072881.10 292 KRDIINIIACEGKERVGRHELFGKWRSRLQMARFSQYPLNAHVNSVIGTLLRRYSEN-FTAEEKEGAMLLGWKQRSLISVSAW 373
                   *******************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.7391355IPR005202Transcription factor GRAS
PfamPF035143.4E-1145373IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
EDKTRHLLIE CAKALSENDT EKFDKLIKKA WNAASIHGGQ VWHLGSYMVE GLMARRKSLG  60
TTVFHVPKCE EPQSKDWLTY MHVLYEICPY LKFGYMAANG AIADACRDAD RIHIIDFQIA  120
QGTQWVTLLQ ALAARPGGAP RVRITGIDDP VSRYTRRVGS EEVRRMLAVV SQQFKIHVEF  180
RGLSVSSPDV TRDMLDIRPG EALAVNFPLQ LHRTPDESVD TNNPRDGLLR MVKSLSPKVI  240
TLIEQESNTN TSPFLSRFIE TLDYYSAMFE SIDMALPRDG NDRIDPVRHC LKRDIINIIA  300
CEGKERVGRH ELFGKWRSRL QMARFSQYPL NAHVNSVIGT LLRRYSENFT AEEKEGAMLL  360
GWKQRSLISV SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-5083738374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060450.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018732215.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG11e-178CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A059BLW70.0A0A059BLW7_EUCGR; Uncharacterized protein
STRINGXP_010060450.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-141GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]