PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC072043.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 267aa    MW: 31716.6 Da    PI: 8.8223
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC072043.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.82.2e-832265111374
          GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
                   r+HiiDf+i +G+QWp+L+q+L++Rp +  +lRiTg++ p++g   +e+++etg+rLa++Ae+++vpfe+n+ +akr+e +eleeL+++++E++++n
  EcC072043.10   2 RIHIIDFGIHYGFQWPSLIQSLSQRPCP-TKLRITGIELPQPGfrPAERVKETGQRLANYAERFNVPFEYNA-IAKRWELIELEELKIDRDEVTIIN 96 
                   89***********************876.79***********9*****************************.7*********************** PP

          GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                   ++++ ++l+de+ + es rd vL+l+++ +P+++++   +a+hn++ F++rf ea +++s+lfd+l++ +pre++er+ +E+e+lgr++ n +aceg
  EcC072043.10  97 CMFRFKNLFDETITEESSRDIVLNLIRRAQPDLFIHGVINANHNAPFFVTRFREASHHFSSLFDMLDTIIPRENQERMLIEKEMLGRQALNTIACEG 193
                   ************************************************************************************************* PP

          GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    er+er e++++W+ r ++aGF +vpls +  + +   ++ ++ + + v+e  ++l+lgWk+r L+++S W+
  EcC072043.10 194 WERVERPESYKQWQLRNMRAGFVQVPLSRRLKQFVFNEMASHYHKDFVVDEVGKWLLLGWKGRFLFAFSTWK 265
                   ******************************9998888888888777*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.0051245IPR005202Transcription factor GRAS
PfamPF035147.5E-812265IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRIHIIDFGI HYGFQWPSLI QSLSQRPCPT KLRITGIELP QPGFRPAERV KETGQRLANY  60
AERFNVPFEY NAIAKRWELI ELEELKIDRD EVTIINCMFR FKNLFDETIT EESSRDIVLN  120
LIRRAQPDLF IHGVINANHN APFFVTRFRE ASHHFSSLFD MLDTIIPREN QERMLIEKEM  180
LGRQALNTIA CEGWERVERP ESYKQWQLRN MRAGFVQVPL SRRLKQFVFN EMASHYHKDF  240
VVDEVGKWLL LGWKGRFLFA FSTWKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-332265110375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037827.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809331e-124SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A7G00.0A0A059A7G0_EUCGR; Uncharacterized protein
STRINGXP_010037827.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-126GRAS family protein