PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC071450.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 118aa MW: 13895.5 Da PI: 7.5058 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.2e-07 | 15 | 62 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +WT eE+e+++ v+ ++ W+ + ++ ++++ +++s+++++ EcC071450.10 15 SWTSEEQEKFAAIVRSNPPSqgkcFWDQMFKDFP-TKSRVELVSYYFNV 62 7*****************88**************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 12 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-5 | 15 | 63 | No hit | No description |
Pfam | PF00249 | 9.5E-6 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
YVFNFDKMGE EVKHSWTSEE QEKFAAIVRS NPPSQGKCFW DQMFKDFPTK SRVELVSYYF 60 NVFLMLRRRN QNSCTPLNID SDDDEWEPGS VVRGVGHQEV RSSGSIFYSP TKPHSRYR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053726.1 | 9e-82 | PREDICTED: AT-rich interactive domain-containing protein 1 | ||||
Refseq | XP_010053727.1 | 9e-82 | PREDICTED: AT-rich interactive domain-containing protein 1 | ||||
Refseq | XP_010053730.1 | 9e-82 | PREDICTED: AT-rich interactive domain-containing protein 1 | ||||
Refseq | XP_010053731.1 | 9e-82 | PREDICTED: AT-rich interactive domain-containing protein 1 | ||||
Swissprot | Q9LDD4 | 7e-22 | ARID2_ARATH; AT-rich interactive domain-containing protein 2 | ||||
TrEMBL | A0A059CI75 | 2e-80 | A0A059CI75_EUCGR; Uncharacterized protein | ||||
STRING | XP_010053726.1 | 4e-81 | (Eucalyptus grandis) |
Publications ? help Back to Top | |||
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