PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC070851.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 144aa MW: 14604.3 Da PI: 10.7638 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ + r++lg+f+taeeAa+a++ a++ ++g EcC070851.10 21 HYRGVRKRP-WGRYAAEIRDPKK---KSRVWLGTFDTAEEAARAYDSAARDFRG 70 7********.**********854...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.25E-30 | 20 | 78 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-23 | 21 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.21 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-39 | 21 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-14 | 21 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-33 | 21 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-12 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-12 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MAMKEKAGSG GGARLAVREA HYRGVRKRPW GRYAAEIRDP KKKSRVWLGT FDTAEEAARA 60 YDSAARDFRG SKAKTNFPLP SERPVLLLAG AAGGAGAGAG AGAGAGGGKG CNSRSPSQSS 120 TVESSGHDPA AAAAAAPMVD FSAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 21 | 79 | 5 | 64 | ATERF1 |
3gcc_A | 1e-23 | 21 | 79 | 5 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057374.1 | 2e-66 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Swissprot | Q9LW49 | 3e-38 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | K7WJX1 | 7e-40 | K7WJX1_SOLTU; Ethylene-responsive element binding protein | ||||
STRING | XP_010057374.1 | 9e-66 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 4e-28 | erf domain protein 9 |