PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC062781.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 184aa MW: 20726.1 Da PI: 10.2483 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 2 | 44 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W+ eEd++l++a+kq G++ W+ Ia++++ gRt++++k++w+ EcC062781.10 2 KDSWSIEEDKILIQAHKQIGNK-WAEIAKRLP-GRTENSIKNHWN 44 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.1E-15 | 1 | 49 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.862 | 1 | 51 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.6E-17 | 2 | 44 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-16 | 2 | 55 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 4 | 45 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-13 | 4 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
QKDSWSIEED KILIQAHKQI GNKWAEIAKR LPGRTENSIK NHWNATKRRQ FTKRKLLPDS 60 NNSNLLQNYI RSVTTPSPPK WSPPARGPDH RHHNTKKQSL SLSKAAISRG LDMQPEAANC 120 PQQVPDHHHQ LPPPLAERPA SNYFRYPMVD GNGNLGLYQV KDHHYHQGLS EGGGNGGGGR 180 CDND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1idy_A | 1e-19 | 1 | 51 | 4 | 54 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
1idz_A | 1e-19 | 1 | 51 | 4 | 54 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041992.1 | 1e-125 | PREDICTED: myb-like protein AA, partial | ||||
Swissprot | Q9S7L2 | 2e-30 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A2K3ND24 | 1e-29 | A0A2K3ND24_TRIPR; Transcription factor MYB 98-like protein (Fragment) | ||||
TrEMBL | A0A3N6QPA8 | 3e-29 | A0A3N6QPA8_BRACR; Uncharacterized protein | ||||
STRING | XP_010041992.1 | 1e-124 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13303 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 5e-33 | myb domain protein 98 |
Publications ? help Back to Top | |||
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