PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC061967.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 169aa MW: 18823.3 Da PI: 8.6321 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.3e-16 | 27 | 69 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+ EcC061967.10 27 RGNITSDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWN 69 7999******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.333 | 1 | 21 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-11 | 7 | 33 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.11E-19 | 7 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.246 | 22 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-14 | 26 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 27 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-11 | 31 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-20 | 34 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
ISCAGLKRCG KSCRMRWLNY LRPDIKRGNI TSDEEDLILR LHKLLGNRWS LIAGRLPGRT 60 DNEIKNYWNA NLAKREQGGK KPDPSKTEKI KPIAASEVKQ DETQNPVLVG DSALRNKDIV 120 TLANSETAKS GQSSEYESSD ASLPASMSRE RAHLEQLMLD CTVGESDLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-20 | 8 | 75 | 40 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047391.1 | 1e-112 | PREDICTED: transcription factor WER | ||||
TrEMBL | A0A059CMZ8 | 1e-111 | A0A059CMZ8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047391.1 | 1e-111 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 5e-42 | MYB family protein |