PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC057408.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 142aa MW: 16462.2 Da PI: 9.4745

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC057408.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.4	4.1e-16	52	142	2	97
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 fk +++ +l + l++p +f+++h ++ ++ + s rsW vkl +k +++ +++GW F+++ +L++g +vF+l++r++ ++v++f EcC057408.10 52 FKLVIRECHL--KTLSVPDRFIRQHiREN--KG--MATLRYSDRSWPVKLLRCKDKKMASFSAGWIAFARETHLCVGNACVFELIDREDNVFKVSIF 142 5555444444..459********5323..33..55556699***999999***************************999997787775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.5E-19	44	142	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.89E-18	45	142	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.194	49	142	IPR003340	B3 DNA binding domain
CDD	cd10017	2.37E-15	50	142	No hit	No description
SMART	SM01019	1.8E-9	51	140	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-13	60	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MSLKFLILTA GTCKQSKCRA NHLEPVFHDP TPPRPLTTPE LARDFDSEHP FFKLVIRECH 60 LKTLSVPDRF IRQHIRENKG MATLRYSDRS WPVKLLRCKD KKMASFSAGW IAFARETHLC 120 VGNACVFELI DREDNVFKVS IF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010068262.1	3e-89	PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBL	A0A059BAW7	2e-56	A0A059BAW7_EUCGR; Uncharacterized protein
STRING	XP_010068262.1	1e-88	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14804	4	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	8e-15	B3 family protein