PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC056917.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 31627.6 Da PI: 5.2446 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.9e-19 | 151 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrdp++ng +r +lg++ t+++Aa a+++a+ k++g EcC056917.10 151 THYRGVRRRP-WGKYAAEIRDPKKNG--ARMWLGTYKTPQDAALAYDRAAFKIKG 202 68********.***********9998..************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.39E-30 | 151 | 210 | No hit | No description |
Pfam | PF00847 | 1.9E-12 | 151 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-22 | 152 | 211 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-36 | 152 | 216 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.222 | 152 | 210 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 152 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-13 | 153 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-13 | 192 | 212 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MLQEIIGPFQ VDQFDVLKSI CDHLLQDDGD SFSTTYAAPS PANMYSRSSS FGNLLPTENS 60 SELSPKVDDS EDMLVYGALH DALNSRWTIP LASNQELGFK VTAIDDNSNG LALNQELDFE 120 VTAIDYDAID LVTEKKPKTV EHGVQGPVEK THYRGVRRRP WGKYAAEIRD PKKNGARMWL 180 GTYKTPQDAA LAYDRAAFKI KGSKAKLNFP LLIGSAEYEP VRVNPKRRSA EPRSLSTSID 240 DGLTKRTKKR KGEINVDAEV DFGNPIPFHV LEMGILSGDE QFLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-31 | 152 | 217 | 5 | 70 | ATERF1 |
3gcc_A | 8e-31 | 152 | 217 | 5 | 70 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018733020.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A059BAV2 | 1e-117 | A0A059BAV2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010068070.1 | 1e-167 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-58 | ethylene-responsive element binding factor 13 |