PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055910.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRF
Protein Properties Length: 206aa    MW: 22201.9 Da    PI: 10.5945
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055910.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.7e-2591135145
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                   d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  EcC055910.10  91 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 135
                   79****************************************986 PP
2QLQ59.41e-202157137
           QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                  ++FT++Q+++L++Q+l+yKy+ ++ P+P++Ll +i+k
  EcC055910.10 21 GPFTPSQWMELEHQALIYKYITSSIPIPSNLLIPIRK 57
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-112157IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.4292257IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-152256IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.66391135IPR014977WRC domain
PfamPF088791.5E-2192134IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
FNSAASLNGT SMQGVLAGAR GPFTPSQWME LEHQALIYKY ITSSIPIPSN LLIPIRKAFD  60
SAGFSCYPGG LLRSNSLGWG SFHLGFSNTS DPEPGRCRRT DGKKWRCSRD AVADQKYCER  120
HMNRGRHRSR KPVEGQTGHP VSGATNTTSS TKQLPAAPSA SAPTVVPSGG ASNSLNIAHQ  180
QVKNLQHGVL NLNGDASMRR YSSLFS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059815.11e-145PREDICTED: growth-regulating factor 6
SwissprotQ6AWY35e-64GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLA0A059BJP21e-144A0A059BJP2_EUCGR; Uncharacterized protein
STRINGXP_010059815.11e-145(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-50growth-regulating factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]