PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055227.100
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family E2F/DP
Protein Properties Length: 384aa    MW: 41721.6 Da    PI: 6.7968
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055227.100genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.3e-27115197271
        E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  EcC055227.100 115 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsaatpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 197
                    689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.8E-1331384IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.5E-46110202IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-35114197IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.6E-25116197IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.72E-21117198IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.29E-39202321IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.89E-6203239No hitNo description
SMARTSM011388.8E-63204382IPR014889Transcription factor DP, C-terminal
PfamPF087813.6E-30246326IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-32246334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVIGSSSSNH NHQEDVERNP VAAAGAGAGA AVPRSGGGGG SRSWGTTVSG QSVSTSGSMG  60
SPSSRSEQAM ATPASESTFL RMNHLDIQGD DAGSQGDVGG KKKKRGQRAA AGDKSGRGLR  120
QFSMKVCEKV ESKGRTTYNE VADELVAEFA DPGNSAATPD QQQYDEKNIR RRVYDALNVL  180
MAMDIISKDK KEIQWKGLPR TSLNDIEELK TERHGLRNRI EKKAAYLQEL EEQRSRFTNS  240
FNFICLCMKY VGLQNLIQRN EQLFSTGNAP NGGIALPFIL VQTRPHATVE VEISEDMQLV  300
HFDFNSTPFE LHDDNYVLKA MKFCETPGND EMVPVFPSDG GEGSSMSGMY QPQPPYPPMS  360
SAAGRPAASP PLPGILKARV KHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-36108202193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050871.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-163DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A059DF590.0A0A059DF59_EUCGR; Uncharacterized protein
STRINGXP_010050871.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-133Transcription factor DP