PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055223.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Dof
Protein Properties Length: 293aa    MW: 32063.3 Da    PI: 6.3074
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055223.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.84.1e-371368661
        zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                   +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  EcC055223.20 13 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68
                  68***************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-27167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6771367IPR003851Zinc finger, Dof-type
PfamPF027012.3E-311367IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101551IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006886Biological Processintracellular protein transport
GO:0016192Biological Processvesicle-mediated transport
GO:0016567Biological Processprotein ubiquitination
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005484Molecular FunctionSNAP receptor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MERAWNPSVE MSPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG  60
GCRKNRRGKT TRISSSAATS SAYLAAASSP FGSGLSCGSM LRDSNSSLAD PTISSNGSSH  120
IDLALVYANY LNQKPEPAHE ELAGGESDHH NSQPLANLKQ VHDLDNIELM HGNELLGCEF  180
ISELFSETHL SNGNNQMYHQ PHHQAGDSNN LNGIIDQIQS CDGGDASYFS GLPPLPSQGG  240
GTWWNDPDHL MMHHGFASTE LMPVLGPEAN PDLLTSNWRE FDTSIQDATF SRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038927.10.0PREDICTED: dof zinc finger protein DOF3.5-like
STRINGXP_010038927.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.14e-42Dof family protein