PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC055223.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 293aa MW: 32063.3 Da PI: 6.3074 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.8 | 4.1e-37 | 13 | 68 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ EcC055223.20 13 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68 68***************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-27 | 1 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.677 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-31 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 15 | 51 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006886 | Biological Process | intracellular protein transport | ||||
GO:0016192 | Biological Process | vesicle-mediated transport | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004842 | Molecular Function | ubiquitin-protein transferase activity | ||||
GO:0005484 | Molecular Function | SNAP receptor activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MERAWNPSVE MSPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNRRGKT TRISSSAATS SAYLAAASSP FGSGLSCGSM LRDSNSSLAD PTISSNGSSH 120 IDLALVYANY LNQKPEPAHE ELAGGESDHH NSQPLANLKQ VHDLDNIELM HGNELLGCEF 180 ISELFSETHL SNGNNQMYHQ PHHQAGDSNN LNGIIDQIQS CDGGDASYFS GLPPLPSQGG 240 GTWWNDPDHL MMHHGFASTE LMPVLGPEAN PDLLTSNWRE FDTSIQDATF SRK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010038927.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.5-like | ||||
STRING | XP_010038927.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52440.1 | 4e-42 | Dof family protein |