PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC055219.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 268aa MW: 30483.1 Da PI: 5.086 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.2 | 7e-45 | 6 | 130 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPtd elv +yLkkkv gk+++ e+i+evdiy++ Pw Lp ++ +++ +wyfF++r++kyatg r+nr+t+ g+Wk+tg+d++v+ + EcC055219.60 6 LAPGFRFHPTDVELVLYYLKKKVLGKRFRN-EAIAEVDIYNFPPWALPgHARLSRDLKWYFFCPRERKYATGARTNRSTDYGFWKTTGNDRPVIY-N 100 579************************999.89***************433334666**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 g++vg ++L+f++ k+e+tdWvmheyrle EcC055219.60 101 GKTVGKIRSLIFHR---TKTERTDWVMHEYRLE 130 99***********4...44568*********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-53 | 3 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.149 | 6 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-24 | 8 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process | ||||
GO:0006537 | Biological Process | glutamate biosynthetic process | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0030659 | Cellular Component | cytoplasmic vesicle membrane | ||||
GO:0035619 | Cellular Component | root hair tip | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004430 | Molecular Function | 1-phosphatidylinositol 4-kinase activity | ||||
GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016639 | Molecular Function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor | ||||
GO:0017137 | Molecular Function | Rab GTPase binding | ||||
GO:0031625 | Molecular Function | ubiquitin protein ligase binding | ||||
GO:0043424 | Molecular Function | protein histidine kinase binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0051536 | Molecular Function | iron-sulfur cluster binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MAMRSLAPGF RFHPTDVELV LYYLKKKVLG KRFRNEAIAE VDIYNFPPWA LPGHARLSRD 60 LKWYFFCPRE RKYATGARTN RSTDYGFWKT TGNDRPVIYN GKTVGKIRSL IFHRTKTERT 120 DWVMHEYRLE DEDLKTKGVA QDTYVLCEIY EKDGRGPRNG AQYGAPFNEE EWDDDEEVDV 180 PSASGFTGEF ILPDMQQHSE RYCVGSTSNA CPAGPPQITP SVVNVPAPAP ANDVTMADSQ 240 NLCDEYLRSN GIFGDDIPAT SCENDRVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-40 | 1 | 153 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-40 | 1 | 153 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-40 | 1 | 153 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-40 | 1 | 153 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-40 | 1 | 153 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-40 | 1 | 153 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027672.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 isoform X9 | ||||
Refseq | XP_018718284.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 isoform X7 | ||||
Refseq | XP_018718285.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 isoform X8 | ||||
Swissprot | Q9FY82 | 2e-78 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A059AKK7 | 0.0 | A0A059AKK7_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059ALF2 | 0.0 | A0A059ALF2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027667.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 1e-64 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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