PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC055193.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 28485.2 Da PI: 9.1367 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.9 | 4.2e-30 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +++l++a p + r+++++sl+yeA+ r+ +P+yG+vg+++++++ +q+++ EcC055193.60 4 SCNGCRVLRKACSEDCAIRPCLqwiqsPESQANATTFLAKFYGRAGLINLINAGPSHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGNWAQCQSAV 100 6***********************************************************************************************9 PP DUF260 93 elallk 98 +++l++ EcC055193.60 101 DAVLQG 106 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.633 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.7E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006289 | Biological Process | nucleotide-excision repair | ||||
GO:0006308 | Biological Process | DNA catabolic process | ||||
GO:0043161 | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003684 | Molecular Function | damaged DNA binding | ||||
GO:0004519 | Molecular Function | endonuclease activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MRMSCNGCRV LRKACSEDCA IRPCLQWIQS PESQANATTF LAKFYGRAGL INLINAGPSH 60 LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GNWAQCQSAV DAVLQGSSQF LRSPSLDSTG 120 PRLKPCDIRH VRKTSGSGGL RKIRTRTQFK RSSSNRDKLG TEPEELFGRE GSKWIYPGPI 180 YEEASHDSRA AANRESAEAE SIFSVETVEA SLANLGKRNR MLKFDWPAEE SPESPLQLEL 240 GLGVKPSSHP SEPDFGRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044265.1 | 0.0 | PREDICTED: LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 4e-70 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A059D7D3 | 0.0 | A0A059D7D3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044265.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-71 | LOB domain-containing protein 41 |