PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC055189.90 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24377.4 Da PI: 4.6944 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.4e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkC++dCv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lq+q+++l++e++ EcC055189.90 7 SCGACKFLRRKCTSDCVFAPYFCYDQaSTHFAAVHKVFGASNVSKLLLHLPVHTRSDAAITISYEALARMRDPIYGCVAHIFALQEQVANLQEEIEI 103 6************************9779******************************************************************99 PP DUF260 97 lkee 100 l+++ EcC055189.90 104 LGTQ 107 8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.356 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-37 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001510 | Biological Process | RNA methylation | ||||
GO:0006457 | Biological Process | protein folding | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008168 | Molecular Function | methyltransferase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0016746 | Molecular Function | transferase activity, transferring acyl groups | ||||
GO:0016779 | Molecular Function | nucleotidyltransferase activity | ||||
GO:0030246 | Molecular Function | carbohydrate binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRKCTS DCVFAPYFCY DQASTHFAAV HKVFGASNVS KLLLHLPVHT 60 RSDAAITISY EALARMRDPI YGCVAHIFAL QEQVANLQEE IEILGTQMAN LGVGVPSWRN 120 SPVPGNPSDF GPQFSGSDAM NVQFYLNHQQ DPLLPQAEAA TTTNLQALES SMNEEFPPIY 180 GWEDQNPFCD NYPNLLERLF EGVDREAFSS CSWLNGGNGL GK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 3 | 114 | 7 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 3 | 114 | 7 | 117 | LOB family transfactor Ramosa2.1 |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067432.1 | 1e-167 | PREDICTED: LOB domain-containing protein 29 | ||||
Swissprot | Q9LHS8 | 4e-60 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A059BH53 | 1e-165 | A0A059BH53_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067432.1 | 1e-166 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-62 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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