PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055189.230
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 442aa    MW: 47732 Da    PI: 5.8835
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055189.230genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS63.73.7e-20353441192
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                    l++lL+ cA+ v+ +d + a+ +L+++++++sp+gd mqR+a+yf+++L+arla+s++++y  + +++ts    +++l+a++l+  ++P +k
  EcC055189.230 353 LRTLLTLCAQSVAVDDRRSANDMLKQIRQHSSPTGDGMQRMAHYFANGLEARLAGSGTQIYTGIMSKPTS---AASVLKAHRLLLAACPSPK 441
                    5789************************************************************999999...8999************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.876327442IPR005202Transcription factor GRAS
PfamPF035141.3E-17353441IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006457Biological Processprotein folding
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0003729Molecular FunctionmRNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0016746Molecular Functiontransferase activity, transferring acyl groups
GO:0016779Molecular Functionnucleotidyltransferase activity
GO:0030246Molecular Functioncarbohydrate binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDGRVGDVYS RAYGNSRGDV AAAVVPDYNL VRRLRIDDGE NGRNSVGGAV PLSSDLNLPR  60
VALSLSSVNS EKESVEDCDF GDGVLEYINE ILMEEDVEEK ACTFQESAAL QYAEKSFYEI  120
IGKTYPSSQN SHPISRTDIN HDSPADLSAI YSGNLCGYNS VKPGWSCDMG EPRASVPSFV  180
SSSHTSVSSP YSSNSPITDG FADSPVSILR LPELLSEKVK GVEEASKFLP NNSSPSANLE  240
KNSLSSTIPE NDAISTVPEV EKTMGSGRSN KSRGKKNSHS ENVCLEESRS HKHSSLSTES  300
DVSSDMFDAV LLSKDDPLRE ELQRAQQNGQ TKGSNGKKGR VKKQGRQKDI VDLRTLLTLC  360
AQSVAVDDRR SANDMLKQIR QHSSPTGDGM QRMAHYFANG LEARLAGSGT QIYTGIMSKP  420
TSAASVLKAH RLLLAACPSP KI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067415.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_010067417.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_010067418.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_018715158.10.0PREDICTED: scarecrow-like protein 9 isoform X1
TrEMBLA0A059BHN80.0A0A059BHN8_EUCGR; Uncharacterized protein
STRINGXP_010067414.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-55SCARECROW-like 14