PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC055186.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26810.5 Da PI: 7.2713 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.2 | 8.2e-15 | 73 | 125 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++Ns +++Lr+llP a + kKls +++ +A ++I +Lq EcC055186.40 73 KKLNHNASERDRRKKMNSLYSTLRSLLPAA--DQMKKLSVPTTVSRALKHIPELQ 125 6789*************************6..49999***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.583 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 73 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.73E-15 | 73 | 129 | No hit | No description |
Pfam | PF00010 | 3.5E-12 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-11 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009561 | Biological Process | megagametogenesis | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MLSFSPSGWP LEGSTSQEQE SYMHRDAYTC YSPPLVHFPF LSPPTPSPLA EQAFDPLGIP 60 FGVVKDEEAT MVKKLNHNAS ERDRRKKMNS LYSTLRSLLP AADQMKKLSV PTTVSRALKH 120 IPELQQQVEK LTQEKEKLLS RINASRDGDY YTSHQEISTG EGALQILVPS ISATRLSESE 180 VAIQISTRKV MTHKTVDFSE VLLALDYLGF PVISSSTFES CGGMKTTFYN LHVQVLYHR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036348.1 | 1e-143 | PREDICTED: transcription factor ORG2 | ||||
TrEMBL | A0A059D2E5 | 5e-91 | A0A059D2E5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036348.1 | 1e-142 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 6e-46 | bHLH family protein |