PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055143.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 365aa    MW: 41326.9 Da    PI: 7.2892
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055143.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-1449109156
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng....krkrfslgkfgtaeeAakaaiaarkklege 56 
                   s y+GV++++++gr++A+++d  ++n     k +++  g ++ +e Aa+a++ a++k++ge
  EcC055143.60  49 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnrKGRQVFAGAYDDEETAARAYDLAALKYWGE 109
                   57*******************999955655444*************************997 PP
2AP252.21.5e-16151202155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  EcC055143.60 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 202
                   89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1649118IPR016177DNA-binding domain
CDDcd000181.30E-1749118No hitNo description
PfamPF008471.7E-1049109IPR001471AP2/ERF domain
PROSITE profilePS5103219.01950116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-1450117IPR001471AP2/ERF domain
SMARTSM003801.9E-2250122IPR001471AP2/ERF domain
PRINTSPR003677.1E-65162IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17151211IPR016177DNA-binding domain
CDDcd000183.55E-24151212No hitNo description
PfamPF008474.7E-12151202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17152210IPR001471AP2/ERF domain
PROSITE profilePS5103218.321152210IPR001471AP2/ERF domain
SMARTSM003802.7E-25152216IPR001471AP2/ERF domain
PRINTSPR003677.1E-6192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006914Biological Processautophagy
GO:0009737Biological Processresponse to abscisic acid
GO:0030244Biological Processcellulose biosynthetic process
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016760Molecular Functioncellulose synthase (UDP-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAKLSQQNQR NNVNNNKRNE NVRGNNGGVT KVKRTRRSVP RESPPQRSSI YRGVTRHRWT  60
GRYEAHLWDK NCWNESQNRK GRQVFAGAYD DEETAARAYD LAALKYWGEG TILNFPLSTY  120
EKELKEMEGQ SREEYIGTLR RKSNGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL  180
GTYATQEEAA IAYDMAAIEY RGLDAVTNFD PSRYIKGLEP IDNNNLIQSQ TSTNADLNPS  240
LSLVNSSLPA SSHQLGISYF QNQQTDVPIE SLETLPTQPH RANATSAPGL LLQSSKFKEM  300
MEMTSAVDCS SSSRESELPQ CVSFPDEVKT HFECHDFSCG TETDDMIFAD LCLVSHPMFE  360
LELGA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018726073.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-104AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A059CK230.0A0A059CK23_EUCGR; Uncharacterized protein
STRINGXP_010050254.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-101ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]