PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055058.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 708aa    MW: 80149.7 Da    PI: 5.5659
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055058.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.32.1e-1123377053373
          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lL++cA+ v+s+d++  ++lL+++++++sp+gd +qRla yf+++L+arl+++ +  y+ l  + +s    +e l+++++f++++P+ ++s++ aN
  EcC055058.90 337 TLLTQCAQSVASNDHRSSRELLKQIRQHSSPYGDGTQRLAYYFANGLEARLVGTETPSYSVLLGNGAS---AAEILKSYQVFVQACPFKRMSNFFAN 430
                   69***************************************************888888888777777...89************************ PP

          GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                   ++I++ +e+++r+HiiDf+i +G+QWp+L+q ++ R++gpp++R+Tg++ p++g   +e++eetg+rL+k+A++++v+fe++v +ak++e+++le+L
  EcC055058.90 431 RTIMKRAEQARRLHIIDFGILYGFQWPCLIQRISRRQGGPPKIRMTGIEFPQPGfrPSERVEETGRRLEKYAKRFNVDFEYQV-IAKKWETIQLEDL 526
                   *****************************************************9****************************9.7************ PP

          GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                   +++ +E+++Vn+ ++l++l desv ++s+rd+vL+l+++++P+++v+   + ++n++ F++rf eal ++s+lfd+++++lpre+ +r+  E+e+++
  EcC055058.90 527 KLEGDEMTVVNCLHRLKNLADESVLMNSPRDAVLNLIRRINPDIFVHGVVNGSYNAPFFVTRFREALFHFSSLFDMFDVSLPREDPQRMLFEKEVFA 623
                   ************************************************************************************************* PP

          GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   r+++n++aceg++r+er et+++W+ r ++aGF+++pl++++  ++k  ++  + + + v+++  ++++gWk+r + ++S+W
  EcC055058.90 624 RDAMNAIACEGFARVERPETYKQWQIRNMRAGFRQIPLDDEIFRKVKKTVKVQYHRDFIVDQDGCWMLQGWKGRVIHALSCW 705
                   ****************************************************99999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.957309686IPR005202Transcription factor GRAS
PfamPF035147.1E-110337705IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003676Molecular Functionnucleic acid binding
GO:0005506Molecular Functioniron ion binding
GO:0005507Molecular Functioncopper ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016787Molecular Functionhydrolase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MESLLTEHSS SLNGFKFDHR SISIHPNCNL INGFKHDAEP DNPVSSASSL EVESPEDSDT  60
SNSILKFIGE MLMEEDLEEK NCMLQDCLAA LQAEEKNWRD VLYQKDTPSS EHSSPSLNQN  120
FMSRYYYYSP ENSNSDGCYN CAAVSNHVEF NGAHEQGNCD ASCAAVIDSP SSSYLDLDSY  180
SGIQAANELL LSRTTDILGV GSNRTVFLEP KEVVDHTGSE GEGSQCSPNR EKKSHGREDE  240
EYQQGGRSNK QSAIFVEEEF DEQTALFDKV LLCQGGIGDQ LCPLYDNPEK QENEELPQNV  300
PTKGSSSSSS SSSGNSSGKT SRRRKKGSGG DMVDLWTLLT QCAQSVASND HRSSRELLKQ  360
IRQHSSPYGD GTQRLAYYFA NGLEARLVGT ETPSYSVLLG NGASAAEILK SYQVFVQACP  420
FKRMSNFFAN RTIMKRAEQA RRLHIIDFGI LYGFQWPCLI QRISRRQGGP PKIRMTGIEF  480
PQPGFRPSER VEETGRRLEK YAKRFNVDFE YQVIAKKWET IQLEDLKLEG DEMTVVNCLH  540
RLKNLADESV LMNSPRDAVL NLIRRINPDI FVHGVVNGSY NAPFFVTRFR EALFHFSSLF  600
DMFDVSLPRE DPQRMLFEKE VFARDAMNAI ACEGFARVER PETYKQWQIR NMRAGFRQIP  660
LDDEIFRKVK KTVKVQYHRD FIVDQDGCWM LQGWKGRVIH ALSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-473397058374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043517.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_010043518.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_010043519.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9XE581e-178SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D5550.0A0A059D555_EUCGR; Uncharacterized protein
STRINGXP_010043517.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]