PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055058.100
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 786aa    MW: 88381.6 Da    PI: 6.4333
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055058.100genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.64.5e-1104107831373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL+ cA+avs++d++ a  lL ++++ +sp+g+  qR+a+yf+ AL+arla+ + + ++a+  s  ++++++++l+a++l + ++P++kf+ l
  EcC055058.100 410 LRSLLILCAQAVSTNDFKTACGLLRQIRQDSSPSGNGSQRVAHYFADALEARLAG-SAGRSQAFYYSVIQKRSVADKLKAYHLEYSACPFPKFQIL 504
                    6899***************************************************.66677778777777789*********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      N +Il+++e+++ +HiiDf+i++G+QWp  +q+L++R++g p+lRiTg++ p++g   +e++e+tg+rLak++++++vpfef+++++ ++e++e
  EcC055058.100 505 FSNYMILKSAETAKVLHIIDFGINYGFQWPIVIQELSKRTGGVPKLRITGIELPQPGfrPSEKIEQTGHRLAKYCKRFNVPFEFQAVASASWECIE 600
                    ********************************************************9*****************************9999****** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    + +L+++++E++aVn+  + ++l+de+v+++ +rd vL+l+ s++P+++++  ++ ++n + F +rf eal   sa++d +++++ +++ +r ++E
  EcC055058.100 601 VADLKIQSDEVVAVNCLARFENLYDETVEINCQRDMVLNLIGSIKPQIFIHGIRNGSYNMPFFITRFREALFQLSAIYDVFDTTVVHDNVQRFVLE 696
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    + ++gre++n+vaceg er+er et+++W+ rl+++GF+++pl+++  k+a++ l+  + + +++eee+++++lgW++r +  +++W
  EcC055058.100 697 KDVFGREVMNIVACEGMERVERPETYKQWQLRLTRVGFQQLPLDQELIKKARAKLSGNYHKDFKLEEENNWMLLGWRGRIISGCTCW 783
                    ***********************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.809384764IPR005202Transcription factor GRAS
PfamPF035141.6E-107410783IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003676Molecular Functionnucleic acid binding
GO:0005506Molecular Functioniron ion binding
GO:0005507Molecular Functioncopper ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016787Molecular Functionhydrolase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MEVNLPEFSS SVDGFKDNSL THPAISYHSR NLCNVVKIDE PPVVSNSAEM TSLPHQPEPM  60
YYVPSVPINL DADLNLPSRD TRPNLEMLHH STSSSESANI RGGSLPLSDH SNSMDPVLKY  120
VNQILMEEKM EQQPWVVPNI VALRHTEKSL YDALGKKYPD SPEQTKGVDT NQVINSSCWN  180
PWGRRSDRGS NSTTITSSNS CLPLDPNSHD DPEGNNYAFI HAKSPGNVVL QSNMDYKFQS  240
SVNSVDSLPK YGDNFCYSVP SEVLISPIFN NNESVVQFNK GLEEARKFIP RGFHITIGQE  300
KDGLAPTIRD KEEIGIKGSH QSENGSRGRK NHESHYARSE EGPANKQLAS YNGDPELSDL  360
LEKLLLSNKN GGLLSLECKS EKLSEIKDPQ DPNGTGDQSN KNGNESTLDL RSLLILCAQA  420
VSTNDFKTAC GLLRQIRQDS SPSGNGSQRV AHYFADALEA RLAGSAGRSQ AFYYSVIQKR  480
SVADKLKAYH LEYSACPFPK FQILFSNYMI LKSAETAKVL HIIDFGINYG FQWPIVIQEL  540
SKRTGGVPKL RITGIELPQP GFRPSEKIEQ TGHRLAKYCK RFNVPFEFQA VASASWECIE  600
VADLKIQSDE VVAVNCLARF ENLYDETVEI NCQRDMVLNL IGSIKPQIFI HGIRNGSYNM  660
PFFITRFREA LFQLSAIYDV FDTTVVHDNV QRFVLEKDVF GREVMNIVAC EGMERVERPE  720
TYKQWQLRLT RVGFQQLPLD QELIKKARAK LSGNYHKDFK LEEENNWMLL GWRGRIISGC  780
TCWLSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-434147838374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043520.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724289.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724290.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724291.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A059D4N00.0A0A059D4N0_EUCGR; Uncharacterized protein
STRINGXP_010043520.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3464322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-174SCARECROW-like 14