PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055015.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 148aa    MW: 14860.5 Da    PI: 9.6748
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055015.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP74.71.6e-2396144149
                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                   +CqvegC++dls+ak y++rhkvC +hsk+++v+v+g+eqrfCqqCsr 
  EcC055015.20  96 RCQVEGCRVDLSDAKAYYSRHKVCGMHSKSATVIVAGIEQRFCQQCSRS 144
                   6**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-2590144IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.47894148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-2394143IPR004333Transcription factor, SBP-box
PfamPF031102.1E-1897145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDVGSGSWTT ESGSSSPPPL ESLNGLKFGQ KIYFQNNNSS NNAAAPKHGS GSGSGSGSGS  60
SSAAAPAPGS GTPPKKVRAS AGGGACGAIQ GGQPPRCQVE GCRVDLSDAK AYYSRHKVCG  120
MHSKSATVIV AGIEQRFCQQ CSRSKAIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-1597147656squamosa promoter-binding protein-like 12
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057993.12e-58PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A059DIL44e-57A0A059DIL4_EUCGR; Uncharacterized protein
STRINGXP_010057993.16e-58(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-23squamosa promoter binding protein-like 9