PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC055006.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 61345.4 Da PI: 6.2469 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 409.5 | 3.1e-125 | 175 | 545 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++++++cA+a+s+ d++ a al+ l++++s gdp+qRl ay++e+L+a+l s+s +y++l+++e + sse l+ ++++++++P+ kf+++ EcC055006.30 175 LKQVVIACARAISDADTSSAAALMDMLEQMVSVMGDPIQRLGAYLLEGLRAKLKFSGSIIYRKLKCKEPT---SSELLTNMQVLYQICPYWKFAYVS 268 57899****************************************************************9...999********************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 +N I +a+e+e+r+Hi+Df+i+qG QW++++qaLa+Rp+gpp lRiTg+++++s+ + le +g++L+k+Ae+++vpfef+ +a +l+++el+ EcC055006.30 269 TNVIISKAMENEQRIHIVDFQITQGSQWVTFIQALAQRPGGPPLLRITGIDDSDSVhaRGAGLEIVGQKLSKIAESCNVPFEFHD-AAVSLSEVELQ 364 ****************************************************998888999************************.899******** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L v+pgEala n+ + lh+++desvs++++rd+vL+l+kslsP+vv++veqe+++n++sF+ rf+e+++yy a+f+s+++ pr++++ri+ E+ + EcC055006.30 365 NLMVRPGEALAANCPYILHHIPDESVSTQNHRDRVLRLIKSLSPRVVTLVEQESNTNTSSFFPRFIETFDYYKAMFESIDVARPRDDKQRISAEQNC 461 ************************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++r+ivn+vac g er erhe ++kWr+r+++aGF+++p++ +++ + +l++++++ yr+e+++g+l+lgW +r++ ++S+Wr EcC055006.30 462 VARDIVNMVACDGPERMERHELFGKWRSRFQMAGFNQLPVDASVTRAVLNMLKQYHGN-YRIEQREGALYLGWINRAMSTLSVWR 545 ********************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.288 | 149 | 526 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-122 | 175 | 545 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005509 | Molecular Function | calcium ion binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity | ||||
GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MPNFQKQHSS TSVLSFYQQP PQMIKPRYLS NYEQIDGGMN RGLAGQGFDS SFQNYDEQIF 60 TLDSSTSASG LASYDSGSNI STSPDGTPFV KSFHSDQHLS VENVSGSPLS VSSIADYGND 120 ELRDKLRELE MSLLGPESDI CDYQNSCFKN SSHNIFPTSM WYSSRVRDMM PKPDLKQVVI 180 ACARAISDAD TSSAAALMDM LEQMVSVMGD PIQRLGAYLL EGLRAKLKFS GSIIYRKLKC 240 KEPTSSELLT NMQVLYQICP YWKFAYVSTN VIISKAMENE QRIHIVDFQI TQGSQWVTFI 300 QALAQRPGGP PLLRITGIDD SDSVHARGAG LEIVGQKLSK IAESCNVPFE FHDAAVSLSE 360 VELQNLMVRP GEALAANCPY ILHHIPDESV STQNHRDRVL RLIKSLSPRV VTLVEQESNT 420 NTSSFFPRFI ETFDYYKAMF ESIDVARPRD DKQRISAEQN CVARDIVNMV ACDGPERMER 480 HELFGKWRSR FQMAGFNQLP VDASVTRAVL NMLKQYHGNY RIEQREGALY LGWINRAMST 540 LSVWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-53 | 182 | 544 | 26 | 378 | Protein SCARECROW |
5b3h_A | 4e-53 | 182 | 544 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-53 | 182 | 544 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057817.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Swissprot | Q9M0M5 | 0.0 | SCL13_ARATH; Scarecrow-like protein 13 | ||||
TrEMBL | A0A059C9U6 | 0.0 | A0A059C9U6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057817.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 0.0 | SCARECROW-like 13 |