PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054970.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 331aa    MW: 36576.9 Da    PI: 8.2166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054970.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.81.6e-3128132199
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                   f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +
  EcC054970.60  28 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTSDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGaGEsGKDR 124
                   89**************************99555568889************************************************7757778888 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l++ ++r+
  EcC054970.60 125 LYIDWRRR 132
                   99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4222140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-3025130IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-2626115No hitNo description
SMARTSM010193.5E-2328133IPR003340B3 DNA binding domain
PROSITE profilePS5086314.67728133IPR003340B3 DNA binding domain
PfamPF023624.2E-2928132IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006812Biological Processcation transport
GO:0015689Biological Processmolybdate ion transport
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008171Molecular FunctionO-methyltransferase activity
GO:0008324Molecular Functioncation transmembrane transporter activity
GO:0015098Molecular Functionmolybdate ion transmembrane transporter activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDLSPRNDGY ITQESYTPCA EIEKEHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSST  60
SDKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGAGES  120
GKDRLYIDWR RRPNPPEHTS VFPNLPLPHH QLSFHRSVPW GLSSLVGSAV TSSTTFLGNP  180
YQSYGSTSNH PYGHGDIINS SNYGGSSVFL LRSSVAPRQL GIMENMEVQG GGGGGGGLLG  240
GRRGVEPVVF DSVPVVHGNK AAAKKFRLFG VNMECPDSES SEPSTSSLQP PQISATTSQY  300
PSHELRVYDG WPLLNVPSKD KASSMSLDLE I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-65231333114B3 domain-containing transcription factor NGA1
5os9_B5e-65231333114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056052.10.0PREDICTED: B3 domain-containing protein Os03g0120900
SwissprotQ6EU303e-71Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A059C2E30.0A0A059C2E3_EUCGR; Uncharacterized protein
STRINGXP_010056052.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-68B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]