PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054959.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TCP | ||||||||
Protein Properties | Length: 188aa MW: 20210.5 Da PI: 6.8053 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.3 | 3.9e-36 | 74 | 149 | 3 | 79 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79 + k++++++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++ti WLl+ a+pai+++tgt++++a ++ + EcC054959.10 74 PSKRSTKDRHTKVEGRGRRVRMPAACAARIFQLTRELGHRSDGETIRWLLERAEPAIIAATGTGTIPAIAMsV--DGA 149 679***************************************************************9955521..222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-29 | 78 | 146 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.877 | 79 | 133 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
METTRKHQMD EREEDDGATT LELRIDGGGH SAADDRPQDH DSAAAAVSST LTLKEEPGKE 60 ETPQQLRAAA ASLPSKRSTK DRHTKVEGRG RRVRMPAACA ARIFQLTREL GHRSDGETIR 120 WLLERAEPAI IAATGTGTIP AIAMSVDGAF KIPTSAGAAK DPEPGDPPGK KKPKRPANSD 180 YVDVGEHM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053872.1 | 1e-131 | PREDICTED: transcription factor TCP9 | ||||
Swissprot | O64647 | 1e-52 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A059CJ11 | 1e-103 | A0A059CJ11_EUCGR; Uncharacterized protein | ||||
STRING | XP_010053872.1 | 1e-131 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9831 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-35 | TCP family protein |