PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054956.60

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YB

Protein Properties

Length: 160aa MW: 18177.2 Da PI: 5.3389

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054956.60	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	160.7	2.2e-50	3	98	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 eq+r+lPianv+rimk++lP akisk+ak+t+qec++efi+fvt+easd+c++e+rkt+ngdd++wal++lGf++y+e++ yl+kyre e+ek EcC054956.60 3 DEQERLLPIANVGRIMKEILPPSAKISKEAKQTIQECATEFIGFVTGEASDRCHKENRKTVNGDDICWALSNLGFDNYAEAMARYLHKYREYEREK 98 69*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-50	2	134	IPR009072	Histone-fold
SuperFamily	SSF47113	1.11E-39	5	134	IPR009072	Histone-fold
Pfam	PF00808	2.8E-25	8	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.4E-17	36	54	No hit	No description
PRINTS	PR00615	5.4E-17	55	73	No hit	No description
PRINTS	PR00615	5.4E-17	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008168	Molecular Function	methyltransferase activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MVDEQERLLP IANVGRIMKE ILPPSAKISK EAKQTIQECA TEFIGFVTGE ASDRCHKENR 60 KTVNGDDICW ALSNLGFDNY AEAMARYLHK YREYEREKNR SNSSNNNQTL ATSSGDNKDD 120 GELHLRIQEQ QVRQVETHQS LAPLEFQFID KGKSSTSEPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-39	2	93	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043071.1	1e-117	PREDICTED: nuclear transcription factor Y subunit B-4
Swissprot	O04027	9e-54	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A059D4G7	1e-116	A0A059D4G7_EUCGR; Uncharacterized protein
STRING	XP_010043071.1	1e-117	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-51	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]