PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054941.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 556aa    MW: 60290.4 Da    PI: 6.5066
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054941.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.41.6e-871905553374
          GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   + L+++Ae+++s++l+laq +Larl+++ + p+g+p+qR+a+yf+eA ++ l+   ++ ++  p++ +s+ + ++++ a+k+fs  sPi  f+h+ta
  EcC054941.60 190 DELIQAAECFDSSELQLAQMILARLNQRlRCPAGKPVQRAAFYFKEAFQSLLLL--QSGSNRPPARLSSWPDIVQTIRAYKAFSGNSPISMFTHFTA 284
                   579************************99**********************998..6777888999999999************************* PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    qa+le+++g++  H++Dfdi+ G+Q++++++++a+R+     +pp +RiT+v+++e   + e++ ++++L+++A+el+++++ ++++++++e+l++
  EcC054941.60 285 IQALLESLDGSTVFHVVDFDIGFGGQYASFMKEIADRAdsckLQPPIVRITAVVPEE--FAIETKLIRDNLSQYAHELKLRVDVEFVLVRAFEMLSF 379
                   **************************************5554459**********66..889999******************************** PP

          GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikv 285
                   +++++  g +laV+l+ ++ + l   ++ ++   ++L  v++l+P +vv+++ e  ad    +sF + fl ++e+y+++f+s+++      ++++k+
  EcC054941.60 380 KSINFIDGASLAVHLSPAILHRL---GPASN-VARFLVDVRRLNPSIVVFADTEpwADAaAPASFKRSFLGCFEHYATVFESVDVAT-GGGDWARKI 471
                   ****************9998888...34444.568*******************887776778********************9994.5668999** PP

          GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   E  ll+++i+ +v ++ ++         +Wre+++ aG++pv+ls++a  qa+ ll kv+++g++v  ++++lvl+W+dr+Lv++SaW+
  EcC054941.60 472 EGYLLRPRITAAVEAAAKR-----AAPPSWREAFHGAGMRPVRLSQFADYQAEFLLGKVQVRGFHVARRQAELVLCWHDRALVATSAWK 555
                   *************998887.....7799************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.051162535IPR005202Transcription factor GRAS
PfamPF035145.6E-85190555IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0017025Molecular FunctionTBP-class protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0045735Molecular Functionnutrient reservoir activity
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MRVPVTSQPP AIAAAPAAGA AQPLKPVSAA AAAPPPLCYE PTSVLDLRSP ASDKHPEVAP  60
LPGGGGGGGG SGGGAGGDGD DGSAALQWDE HAMQTLDWDS IMRDLGLHDD SAPPFRANPH  120
VCPADAFPPP PPPPPPHHHH HHHQQHHQQL EPPGHFLPHE FALSDGYSNP LDSCADSPAG  180
WNGLGPDFFD ELIQAAECFD SSELQLAQMI LARLNQRLRC PAGKPVQRAA FYFKEAFQSL  240
LLLQSGSNRP PARLSSWPDI VQTIRAYKAF SGNSPISMFT HFTAIQALLE SLDGSTVFHV  300
VDFDIGFGGQ YASFMKEIAD RADSCKLQPP IVRITAVVPE EFAIETKLIR DNLSQYAHEL  360
KLRVDVEFVL VRAFEMLSFK SINFIDGASL AVHLSPAILH RLGPASNVAR FLVDVRRLNP  420
SIVVFADTEP WADAAAPASF KRSFLGCFEH YATVFESVDV ATGGGDWARK IEGYLLRPRI  480
TAAVEAAAKR AAPPSWREAF HGAGMRPVRL SQFADYQAEF LLGKVQVRGF HVARRQAELV  540
LCWHDRALVA TSAWKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2722255536375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070042.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-152SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A059AX950.0A0A059AX95_EUCGR; Uncharacterized protein
STRINGXP_010070042.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-145GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]