PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054936.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TCP | ||||||||
Protein Properties | Length: 219aa MW: 22243.4 Da PI: 6.2698 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 53.5 | 9.9e-17 | 1 | 51 | 38 | 88 |
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ + ++ s+s++ s++ EcC054936.50 1 ELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALSGAAGSVSQQGASIS 51 7********************************999666666555544444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 14.776 | 1 | 25 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.5E-11 | 1 | 210 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006629 | Biological Process | lipid metabolic process | ||||
GO:0055085 | Biological Process | transmembrane transport | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0008081 | Molecular Function | phosphoric diester hydrolase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016597 | Molecular Function | amino acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
ELGHKSDGET IQWLLQQAEP SIIAATGTGT IPASALSGAA GSVSQQGASI SAGLHQKLDD 60 LGGPSVGPGG RHPWAMAGGG GNLGRPHHVA AGMWPGVGGF GFGSASTSAA AAPANLGGEG 120 PNYLQKIGFP GFDMAGANMG HMSFSSILSG SMSNQQLPGL ELGLSAQEGH IGVLNPQTLN 180 QIYQQMGQQA RSQQQHQHQE HQHQQQQSAA KDDSQESGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028978.1 | 1e-150 | PREDICTED: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 2e-43 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1Q3B8Z5 | 3e-82 | A0A1Q3B8Z5_CEPFO; TCP domain-containing protein | ||||
STRING | XP_010028978.1 | 1e-150 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-14 | TCP family protein |