PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054909.160
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 471aa    MW: 52628.4 Da    PI: 6.2815
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054909.160genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.33.7e-139464671373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lLl+cA++v++g+l +a+ +L+++s+laspdgd+mqR+aayfteALa r+++s+++l kal++++ s     +el ++kl++e++P+lk +++
  EcC054909.160  46 LIHLLLACANHVANGNLDNANIALEQISQLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKIS--LLPDELLVRKLYFELFPFLKSAFV 139
                    689*************************************************************999998..79********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    ++Nq Ilea+e+e++vHiiD+++ +++QW+aLl++L++Rpegpp+lRiTg+++    +ke l  +++ L++ Ae+l++pf+fn+ ++++le+le+e
  EcC054909.160 140 LTNQSILEAMESEKMVHIIDLNAAEPTQWIALLRSLNTRPEGPPHLRITGIHQ----HKEVLDLMARSLTEEAERLDIPFQFNP-IVSKLENLEIE 230
                    *****************************************************....9**************************.7999******* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll............................................................desvsleserdevL 228
                    +Lrvk+gEala+++vlqlh+ll                                                            + sv    + d++L
  EcC054909.160 231 KLRVKTGEALAISSVLQLHSLLafddenhrrrsplpfknmsgtsshrvllmsqntlgeplekdlangsspstdsatssllsvNASV----KMDNFL 322
                    *************************************************************************9987765444444....4566** PP

           GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                    +++++lsPkv+vv+eq+++hn++++ler++eal+ y+a+fd+le++++r+s er kvE++l+g+ei+n+v+cegaer+erhe+l kW +rl+ aGF
  EcC054909.160 323 NALWGLSPKVMVVTEQDSNHNGSTLLERLVEALHSYAAMFDCLESTVSRTSLERLKVEKMLFGEEIKNIVSCEGAERKERHEKLDKWIQRLDLAGF 418
                    ************************************************************************************************ PP

           GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    ++vpls++   qak l++ ++ d y+++ee+g++v++W+drpL+svSaW
  EcC054909.160 419 GNVPLSYSGRLQAKGLMQGYNCDAYKIKEENGCVVMCWQDRPLFSVSAW 467
                    *********************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.68220448IPR005202Transcription factor GRAS
PfamPF035141.3E-13646467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001678Biological Processcellular glucose homeostasis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006413Biological Processtranslational initiation
GO:0006468Biological Processprotein phosphorylation
GO:0007165Biological Processsignal transduction
GO:0008033Biological ProcesstRNA processing
GO:0015074Biological ProcessDNA integration
GO:0046835Biological Processcarbohydrate phosphorylation
GO:0055114Biological Processoxidation-reduction process
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0003924Molecular FunctionGTPase activity
GO:0004396Molecular Functionhexokinase activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004672Molecular Functionprotein kinase activity
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0005536Molecular Functionglucose binding
GO:0008270Molecular Functionzinc ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016783Molecular Functionsulfurtransferase activity
GO:0020037Molecular Functionheme binding
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MFQDDGSSSV TSSSLQFCSL MSLSPGFGSP HSLLKELKSE ERGLYLIHLL LACANHVANG  60
NLDNANIALE QISQLASPDG DTMQRIAAYF TEALADRILK SWPGLHKALN STKISLLPDE  120
LLVRKLYFEL FPFLKSAFVL TNQSILEAME SEKMVHIIDL NAAEPTQWIA LLRSLNTRPE  180
GPPHLRITGI HQHKEVLDLM ARSLTEEAER LDIPFQFNPI VSKLENLEIE KLRVKTGEAL  240
AISSVLQLHS LLAFDDENHR RRSPLPFKNM SGTSSHRVLL MSQNTLGEPL EKDLANGSSP  300
STDSATSSLL SVNASVKMDN FLNALWGLSP KVMVVTEQDS NHNGSTLLER LVEALHSYAA  360
MFDCLESTVS RTSLERLKVE KMLFGEEIKN IVSCEGAERK ERHEKLDKWI QRLDLAGFGN  420
VPLSYSGRLQ AKGLMQGYNC DAYKIKEENG CVVMCWQDRP LFSVSAWMCR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-67294701380Protein SCARECROW
5b3h_D2e-67294701380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045038.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_010045039.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A059D8X00.0A0A059D8X0_EUCGR; Uncharacterized protein
STRINGXP_010045038.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]