PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054906.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 374aa    MW: 39618.5 Da    PI: 9.5112
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054906.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.41.8e-4274149176
                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                   +CqvegC++dlse+k+y+ rhkvC +hska++v+v+gleqrfCqqCsrfh+l+efD++krsCrrrLa+hnerrrk+
  EcC054906.20  74 RCQVEGCNVDLSEVKTYYLRHKVCGMHSKAATVVVRGLEQRFCQQCSRFHQLNEFDQGKRSCRRRLAGHNERRRKP 149
                   6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-3567136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.02672149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-4073153IPR004333Transcription factor, SBP-box
PfamPF031102.1E-3275148IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGSRRPLTHS ASSSSSSPPT SASTDGPEIH FGDVGPGVQA KPGGSTSSRS GSQGTPPKKA  60
RGADGGGGGH QPPRCQVEGC NVDLSEVKTY YLRHKVCGMH SKAATVVVRG LEQRFCQQCS  120
RFHQLNEFDQ GKRSCRRRLA GHNERRRKPP PGSAHYSRHS RFSSSIFDNS TGSAGLVMDF  180
SAYPGPPPRE AWIAPQASNR GPGNQTLGRE KLQLHPPWQS SPESHQYNLF LQGPSPSVGG  240
TSFPGPGIPP GESFNPSCAL SLLSNQQPDS ASQASGRALN SNVLSPQASV GAQVINPLDA  300
AVGNFSSASW ALKVNEAGGS APDIAPDLGL GHVSQPLNGP FSSGLEFSLQ SRRQNTDQDH  360
SQDYNSTQQR HWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-32751481184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036477.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A059A3340.0A0A059A334_EUCGR; Uncharacterized protein
STRINGXP_010036477.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-53squamosa promoter binding protein-like 9