PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054893.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 386aa MW: 42597.2 Da PI: 5.7951

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054893.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.8e-31	228	283	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+ F++a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ EcC054893.20 228 KQRRCWSTELHRGFLHALQQLGGPDVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 283 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-27	225	286	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.398	225	285	IPR017930	Myb domain
SuperFamily	SSF46689	6.18E-17	226	285	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-26	228	283	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-5	230	281	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MESWKRGKKK KMEYPERTRS YVEALEEERR KIQVFERELP LCLELVIQAI ERCKQQLSVQ 60 GQSSECNSEQ TSMDGGRVLE EFIPLKGPYS GDDDEDDACE EEDDGDGDGD GDVHHSSRDD 120 KSGDDNAMEK SDWLRSAQLW NPNPDPIPHR EVQDPPPPPP PSKEVAAVAN QLKSHESGAF 180 RPFRIGENNS TKKKQPPGRA APPAPDAAAC STAETASGRT SRQAAQRKQR RCWSTELHRG 240 FLHALQQLGG PDVATPKQIR EVMKVDGLTN DEVKSHLQKY RLHARRPSPN GHNNANAEAP 300 QFLVVGGIWM QPPGFPAVAT GKLPLEAASN RVYAPVTMLP QPLGPSHKEC GFVTSEERGS 360 QSEVGVDHFN NSSSTTSSST HMTVDL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MESWKRGKKK KMEYPERTRS YVEALEEERR KIQVFERELP LCLELVIQAI ERCKQQLSVQ  60
GQSSECNSEQ TSMDGGRVLE EFIPLKGPYS GDDDEDDACE EEDDGDGDGD GDVHHSSRDD  120
KSGDDNAMEK SDWLRSAQLW NPNPDPIPHR EVQDPPPPPP PSKEVAAVAN QLKSHESGAF  180
RPFRIGENNS TKKKQPPGRA APPAPDAAAC STAETASGRT SRQAAQRKQR RCWSTELHRG  240
FLHALQQLGG PDVATPKQIR EVMKVDGLTN DEVKSHLQKY RLHARRPSPN GHNNANAEAP  300
QFLVVGGIWM QPPGFPAVAT GKLPLEAASN RVYAPVTMLP QPLGPSHKEC GFVTSEERGS  360
QSEVGVDHFN NSSSTTSSST HMTVDL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044289.1	0.0	PREDICTED: myb family transcription factor EFM
TrEMBL	A0A059D6Z4	1e-134	A0A059D6Z4_EUCGR; Uncharacterized protein
STRING	XP_010044289.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	8e-73	G2-like family protein